About Gene List

PF3D7_0205700

Genome location: Pf3D7_02_v3:230,768..232,631(+)

Genome classification: Core

Function and Localization

Product Description: RNA-binding protein, putative

SignalP Peptide: N/A

# Transmembrane Domains: 0

EC Numbers: None

Curated GO (PlasmoDB): None

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed nd nd
Trophozoite not expressed nd nd
Schizont possibly expressed nd nd
Gametocyte not expressed nd nd

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_0205700.2

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 0.298 | MFS: -3.275 | #Insertions: 1

PlasmoGEM Phenotype: Dispensable (Pb ortholog: PBANKA_0303400)

  • Relative Growth Rate: 0.88 ± 0.22
  • Confidence: 4.39

RMgmDB ABS Phenotype: Different from wild type (Pb ortholog: PBANKA_0303400)

Modification: Disrupted | RMgm-4203

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: O96152

"Best" AlphaFill ligand hit: No AlphaFill hits

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_533294

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 1 9 6 23
disruptive 3 21 9 35
missense 3 19 9 29

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 2 18 15 18
disruptive 11 41 24 50
missense 6 31 20 37

PlasmoDB Total SNPs: 81

Non-coding: 76 | Synonymous: 4 | Nonsynonymous: 1 | Stop Codon: 0

Protein Information

Protein Length: 205 | Molecular Weight (kDa): 24.326

UniProt ID(s): O96152

PDB ID(s): None

Isoelectric Point: 7.29

Protein Domain Annotations:

Source Family ID Description
InterPro IPR000504 RNA recognition motif domain
InterPro IPR035979 RNA-binding domain superfamily
PFam PF00076 RNA recognition motif domain
Superfamily SSF54928 RNA-binding domain superfamily

Associated Publications

PMID Title Authors DOI/Link
9804551 Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, Tettelin H, ..., Hoffman SL 10.1126/science.282.5391.1126
12368864 Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, Hall N, ..., Barrell B 10.1038/nature01097