About Gene List

PF3D7_0420200 (ACPS)

Genome location: Pf3D7_04_v3:909,409..912,119(+)

Genome classification: Core

Function and Localization

Product Description: holo-[acyl-carrier-protein] synthase, putative

SignalP Peptide: N/A

# Transmembrane Domains: 0

EC Numbers: 2.7.8.7 (Holo-[acyl-carrier-protein] synthase)

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0020011 apicoplast
Function GO:0016740 transferase activity
Process GO:0006633 fatty acid biosynthetic process

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.02 0.99
Trophozoite not expressed 0.10 0.93
Schizont not expressed 0.02 0.99
Gametocyte possibly expressed 0.12 0.92

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_0420200

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Non - Mutable in CDS

MIS: 0.234 | MFS: -2.64 | #Insertions: 0

PlasmoGEM Phenotype: N/A

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8I1N7

"Best" AlphaFill ligand hit: COA (coenzyme a, Local RMSD=0.14) with 3QMN (Global RMSD=6.11)

BRENDA EC Inhibitors:

EC # Name EC Inhibitors
2.7.8.7 holo-[acyl-carrier-protein] synthase CoAEDTA3',5'-ADPPD 404182SCH-202676Bay 11-7085sanguinarineCalmidazolium6-nitroso-benzopyroneguanidinyl-naltrindoleapo-acyl-carrier protein6-nitroso-1,2-benzopyrone...

Orthology to BindingDB Entries:

UniProt Protein Name Species Homology Source BindingDB Ligands
P96618 Holo-[acyl-carrier-protein] synthase Bacillus subtilis OrthoMCL, OrthoMCL BLAST CHEMBL130278CHEMBL130832CHEMBL339849CHEMBL132388...

Orthology Information

Ortholog Group (OrthoMCL): OG6_101866

No human ortholog(s)

Protein Information

Protein Length: 594 | Molecular Weight (kDa): 70.386

UniProt ID(s): Q8I1N7

PDB ID(s): 2FQ0, 2FQ2

Isoelectric Point: 9.61

Protein Domain Annotations:

Source Family ID Description
InterPro IPR002036 Endoribonuclease YbeY
InterPro IPR002582 Holo-[acyl carrier protein] synthase
InterPro IPR004568 Phosphopantetheine-protein transferase domain
InterPro IPR008278 4'-phosphopantetheinyl transferase domain
InterPro IPR037143 4'-phosphopantetheinyl transferase domain superfamily
PFam PF01648 4'-phosphopantetheinyl transferase domain
PFam PF02130 Endoribonuclease YbeY
Superfamily SSF55486 4'-phosphopantetheinyl transferase domain superfamily
Superfamily SSF56214

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 9 34 17 30
disruptive 18 51 30 96
missense 18 48 29 85

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 12 64 22 40
disruptive 28 137 62 171
missense 26 115 55 126

PlasmoDB Total SNPs: 162

Non-coding: 105 | Synonymous: 34 | Nonsynonymous: 23 | Stop Codon: 0

Associated Publications

PMID Title Authors DOI/Link
12368867 Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, Pain A, ..., Barrell BG 10.1038/nature01095
30212465 Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. Boucher MJ, Ghosh S, ..., Yeh E 10.1371/journal.pbio.2005895