Product Description: holo-[acyl-carrier-protein] synthase, putative
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: 2.7.8.7 (Holo-[acyl-carrier-protein] synthase)
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0020011 | apicoplast |
| Function | GO:0016740 | transferase activity |
| Process | GO:0006633 | fatty acid biosynthetic process |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.02 | 0.99 |
| Trophozoite | not expressed | 0.10 | 0.93 |
| Schizont | not expressed | 0.02 | 0.99 |
| Gametocyte | possibly expressed | 0.12 | 0.92 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0420200
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.234 | MFS: -2.64 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8I1N7
"Best" AlphaFill ligand hit: COA (coenzyme a, Local RMSD=0.14) with 3QMN (Global RMSD=6.11)
BRENDA EC Inhibitors:
| EC # | Name | EC Inhibitors |
|---|---|---|
| 2.7.8.7 | holo-[acyl-carrier-protein] synthase | CoAEDTA3',5'-ADPPD 404182SCH-202676Bay 11-7085sanguinarineCalmidazolium6-nitroso-benzopyroneguanidinyl-naltrindoleapo-acyl-carrier protein6-nitroso-1,2-benzopyrone... |
Orthology to BindingDB Entries:
| UniProt | Protein Name | Species | Homology Source | BindingDB Ligands |
|---|---|---|---|---|
| P96618 | Holo-[acyl-carrier-protein] synthase | Bacillus subtilis | OrthoMCL, OrthoMCL BLAST | CHEMBL130278CHEMBL130832CHEMBL339849CHEMBL132388... |
Protein Length: 594 | Molecular Weight (kDa): 70.386
UniProt ID(s): Q8I1N7
Isoelectric Point: 9.61
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR002036 | Endoribonuclease YbeY |
| InterPro | IPR002582 | Holo-[acyl carrier protein] synthase |
| InterPro | IPR004568 | Phosphopantetheine-protein transferase domain |
| InterPro | IPR008278 | 4'-phosphopantetheinyl transferase domain |
| InterPro | IPR037143 | 4'-phosphopantetheinyl transferase domain superfamily |
| PFam | PF01648 | 4'-phosphopantetheinyl transferase domain |
| PFam | PF02130 | Endoribonuclease YbeY |
| Superfamily | SSF55486 | 4'-phosphopantetheinyl transferase domain superfamily |
| Superfamily | SSF56214 |
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 9 | 34 | 17 | 30 |
| disruptive | 18 | 51 | 30 | 96 |
| missense | 18 | 48 | 29 | 85 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 12 | 64 | 22 | 40 |
| disruptive | 28 | 137 | 62 | 171 |
| missense | 26 | 115 | 55 | 126 |
PlasmoDB Total SNPs: 162
Non-coding: 105 | Synonymous: 34 | Nonsynonymous: 23 | Stop Codon: 0
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 12368867 | Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. | Hall N, Pain A, ..., Barrell BG | 10.1038/nature01095 |
| 30212465 | Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. | Boucher MJ, Ghosh S, ..., Yeh E | 10.1371/journal.pbio.2005895 |