About Gene List

PF3D7_0531100

Genome location: Pf3D7_05_v3:1,269,832..1,278,893(-)

Genome classification: Core

Function and Localization

Product Description: conserved Plasmodium protein, unknown function

SignalP Peptide: N/A

# Transmembrane Domains: 0

EC Numbers: None

Curated GO (PlasmoDB): None

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.07 0.97
Trophozoite possibly expressed 0.25 0.86
Schizont possibly expressed 1.03 0.52
Gametocyte expressed 0.61 0.69

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_0531100

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 1 | MFS: -0.184 | #Insertions: 13

PlasmoGEM Phenotype: N/A

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8I3F7

"Best" AlphaFill ligand hit: GDP (guanosine-5'-diphosphate, Local RMSD=8.90) with 3CLV (Global RMSD=23.97)

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_533751

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 40 133 72 157
disruptive 146 631 270 519
missense 115 569 241 446

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 73 248 100 163
disruptive 314 1049 347 642
missense 232 894 288 463

PlasmoDB Total SNPs: 386

Non-coding: 42 | Synonymous: 173 | Nonsynonymous: 170 | Stop Codon: 1

Protein Information

Protein Length: 2698 | Molecular Weight (kDa): 325.264

UniProt ID(s): Q8I3F7

PDB ID(s): None

Isoelectric Point: 9.34

Protein Domain Annotations:

Source Family ID Description
InterPro IPR035969 Rab-GTPase-TBC domain superfamily
PFam N/A N/A
Superfamily SSF47923 Rab-GTPase-TBC domain superfamily

Associated Publications

PMID Title Authors DOI/Link
12368867 Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, Pain A, ..., Barrell BG 10.1038/nature01095
16267556 A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, Vignali M, ..., Hughes RE 10.1038/nature04104