Genome location: Pf3D7_06_v3:520,410..521,138(+)
Genome classification: Core
Product Description: transmembrane protein 234, putative
SignalP Peptide: MYFFLYLIIGILWGCTNA
# Transmembrane Domains: 4
EC Numbers: None
Curated GO (PlasmoDB): None
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | no data | N/A | N/A |
Ring | no data | 0.00 | 1.00 |
Trophozoite | no data | 0.03 | 0.98 |
Schizont | no data | 0.04 | 0.97 |
Gametocyte | no data | 0.05 | 0.97 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0612300
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS *tentative
MIS: 0.129 | MFS: -2.944 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: C6KSW7
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
Ortholog Group (OrthoMCL): OG6_104697
Most Similar Human Ortholog: Q8WY98
TM-align score: 0.75 | RMSD: 2.78
Seq Identity: 0.28 | Length: 115 / 118
All Human Orthologs (OrthoMCL):
Gene ID | Description |
---|---|
ENSG00000160055 | transmembrane protein 234 |
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 1 | 4 | 3 | 10 |
disruptive | 1 | 10 | 2 | 15 |
missense | 1 | 10 | 2 | 11 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 2 | 9 | 7 | 12 |
disruptive | 2 | 26 | 8 | 23 |
missense | 1 | 19 | 7 | 14 |
PlasmoDB Total SNPs: 39
Non-coding: 38 | Synonymous: 1 | Nonsynonymous: 0 | Stop Codon: 0
Protein Length: 118 | Molecular Weight (kDa): 13.83
UniProt ID(s): C6KSW7
PDB ID(s): None
Isoelectric Point: 8.83
Protein Domain Annotations:
Source | Family ID | Description |
---|---|---|
InterPro | IPR018908 | Putative transmembrane family 234 |
PFam | PF10639 | Putative transmembrane family 234 |
Superfamily | SSF103481 | N/A |
PMID | Title | Authors | DOI/Link |
---|---|---|---|
12368867 | Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. | Hall N, Pain A, ..., Barrell BG | 10.1038/nature01095 |