Product Description: LMBR1 domain-containing protein, putative
SignalP Peptide: N/A
# Transmembrane Domains: 9
EC Numbers: None
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0016020 | membrane |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | no data | N/A | N/A |
| Ring | no data | 0.01 | 1.00 |
| Trophozoite | no data | 0.02 | 0.99 |
| Schizont | no data | 0.02 | 0.99 |
| Gametocyte | no data | 0.10 | 0.94 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0618400
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 1 | MFS: 0.432 | #Insertions: 4
PlasmoGEM Phenotype: Dispensable (Pb ortholog: PBANKA_1117600)
RMgmDB ABS Phenotype: Different from wild type (Pb ortholog: PBANKA_1117600)
Modification: Disrupted | RMgm-3023
More info: PhenoPlasm Link
AlphaFill Uniprot ID: C6KT24
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 10 | 31 | 14 | 47 |
| disruptive | 11 | 74 | 26 | 115 |
| missense | 10 | 73 | 24 | 106 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 15 | 57 | 25 | 43 |
| disruptive | 25 | 149 | 80 | 124 |
| missense | 18 | 136 | 72 | 97 |
PlasmoDB Total SNPs: 72
Non-coding: 38 | Synonymous: 15 | Nonsynonymous: 19 | Stop Codon: 0
Protein Length: 598 | Molecular Weight (kDa): 71.484
UniProt ID(s): C6KT24
PDB ID(s): None
Isoelectric Point: 9.64
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR006876 | LMBR1-like membrane protein |
| PFam | PF04791 | LMBR1-like membrane protein |
| Superfamily | N/A | N/A |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 11152613 | Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. | Krogh A, Larsson B, von Heijne G, Sonnhammer EL | 10.1006/jmbi.2000.4315 |
| 12368867 | Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. | Hall N, Pain A, ..., Barrell BG | 10.1038/nature01095 |