About Gene List

PF3D7_0618400

Genome location: Pf3D7_06_v3:770,147..772,506(-)

Genome classification: Core

Function and Localization

Product Description: LMBR1 domain-containing protein, putative

SignalP Peptide: N/A

# Transmembrane Domains: 9

EC Numbers: None

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0016020 membrane

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite no data N/A N/A
Ring no data 0.01 1.00
Trophozoite no data 0.02 0.99
Schizont no data 0.02 0.99
Gametocyte no data 0.10 0.94

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_0618400

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 1 | MFS: 0.432 | #Insertions: 4

PlasmoGEM Phenotype: Dispensable (Pb ortholog: PBANKA_1117600)

  • Relative Growth Rate: 0.96 ± 0.20
  • Confidence: 4.61

RMgmDB ABS Phenotype: Different from wild type (Pb ortholog: PBANKA_1117600)

Modification: Disrupted | RMgm-3023

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: C6KT24

"Best" AlphaFill ligand hit: No AlphaFill hits

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_106033

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 10 31 14 47
disruptive 11 74 26 115
missense 10 73 24 106

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 15 57 25 43
disruptive 25 149 80 124
missense 18 136 72 97

PlasmoDB Total SNPs: 72

Non-coding: 38 | Synonymous: 15 | Nonsynonymous: 19 | Stop Codon: 0

Protein Information

Protein Length: 598 | Molecular Weight (kDa): 71.484

UniProt ID(s): C6KT24

PDB ID(s): None

Isoelectric Point: 9.64

Protein Domain Annotations:

Source Family ID Description
InterPro IPR006876 LMBR1-like membrane protein
PFam PF04791 LMBR1-like membrane protein
Superfamily N/A N/A

Associated Publications

PMID Title Authors DOI/Link
11152613 Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. Krogh A, Larsson B, von Heijne G, Sonnhammer EL 10.1006/jmbi.2000.4315
12368867 Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, Pain A, ..., Barrell BG 10.1038/nature01095