Product Description: WD repeat-containing protein, putative
SignalP Peptide: N/A
# Transmembrane Domains: 6
EC Numbers: None
Curated GO (PlasmoDB):
Type | GO Term | Name |
---|---|---|
Component | GO:0044228 | host cell surface |
Function | GO:0042393 | histone binding |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | no data | N/A | N/A |
Ring | no data | 0.35 | 0.83 |
Trophozoite | no data | 0.81 | 0.57 |
Schizont | no data | 0.41 | 0.76 |
Gametocyte | no data | 0.37 | 0.79 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0619800
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.129 | MFS: -2.918 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: C6KT38
"Best" AlphaFill ligand hit: GTX (s-hexylglutathione, Local RMSD=2.06) with 1Q4J (Global RMSD=24.12)
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 24 | 90 | 63 | 135 |
disruptive | 102 | 415 | 215 | 502 |
missense | 72 | 366 | 189 | 441 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 38 | 172 | 103 | 160 |
disruptive | 201 | 848 | 367 | 686 |
missense | 127 | 694 | 304 | 497 |
PlasmoDB Total SNPs: 346
Non-coding: 47 | Synonymous: 140 | Nonsynonymous: 141 | Stop Codon: 18
Protein Length: 2530 | Molecular Weight (kDa): 307.492
UniProt ID(s): C6KT38
PDB ID(s): None
Isoelectric Point: 9.74
Protein Domain Annotations:
Source | Family ID | Description |
---|---|---|
InterPro | IPR036322 | WD40-repeat-containing domain superfamily |
PFam | N/A | N/A |
Superfamily | SSF50978 | WD40-repeat-containing domain superfamily |
PMID | Title | Authors | DOI/Link |
---|---|---|---|
12368867 | Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. | Hall N, Pain A, ..., Barrell BG | 10.1038/nature01095 |
29162636 | Quantitative Proteomic Profiling Reveals Novel Plasmodium falciparum SurfaceAntigens and Possible Vaccine Candidates. | Nilsson Bark SK, Ahmad R, ..., Marti M | 10.1074/mcp.RA117.000076 |