Product Description: conserved Plasmodium membrane protein, unknown function
SignalP Peptide: N/A
# Transmembrane Domains: 11
EC Numbers: None
Curated GO (PlasmoDB):
Type | GO Term | Name |
---|---|---|
Component | GO:0016020 | membrane |
Component | GO:0005634 | nucleus |
Function | GO:0050699 | WW domain binding |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | not expressed | N/A | N/A |
Ring | expressed | 1.44 | 0.42 |
Trophozoite | expressed | 1.18 | 0.44 |
Schizont | expressed | 0.44 | 0.77 |
Gametocyte | not expressed | 1.16 | 0.44 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0703900
Resistome Missense Mutations: G1758R
Resistome Compounds with Missense Mutations: MMV006901, MMV407834, OSM-S-106
Resistome # Samples with Disruptive Mutations: 18 (17 missense, 17 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.12 | MFS: -2.992 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: Not tested (Pb ortholog: PBANKA_0801600)
Modification: Other | RMgm-468
More info: PhenoPlasm Link
AlphaFill Uniprot ID: N/A
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 61 | 197 | 124 | 236 |
disruptive | 249 | 755 | 473 | 949 |
missense | 172 | 643 | 427 | 820 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 95 | 389 | 161 | 322 |
disruptive | 444 | 1648 | 646 | 1223 |
missense | 283 | 1321 | 547 | 868 |
PlasmoDB Total SNPs: 702
Non-coding: 72 | Synonymous: 294 | Nonsynonymous: 336 | Stop Codon: 0
Protein Length: 4358 | Molecular Weight (kDa): 529.367
UniProt ID(s): A0A143ZY62
PDB ID(s): None
Isoelectric Point: 8.66
Protein Domain Annotations:
Source | Family ID | Description |
---|---|---|
InterPro | N/A | N/A |
PFam | N/A | N/A |
Superfamily | N/A | N/A |
PMID | Title | Authors | DOI/Link |
---|---|---|---|
11152613 | Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. | Krogh A, Larsson B, von Heijne G, Sonnhammer EL | 10.1006/jmbi.2000.4315 |