Genome location: Pf3D7_08_v3:1,101,887..1,102,804(-)
Genome classification: Core
Product Description: crystalloid-specific PH domain-containing protein, putative
SignalP Peptide: MRNIIFLFCLILFLVCFCQG
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0044312 | crystalloid |
| Component | GO:0005737 | cytoplasm |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.02 | 0.99 |
| Trophozoite | not expressed | 0.02 | 0.99 |
| Schizont | not expressed | 0.01 | 0.99 |
| Gametocyte | expressed | 1.44 | 0.58 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_0825700
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 0.991 | MFS: -2.392 | #Insertions: 1
PlasmoGEM Phenotype: Dispensable (Pb ortholog: PBANKA_0704900)
RMgmDB ABS Phenotype: Not tested (Pb ortholog: PBANKA_0704900)
Modification: Tagged | RMgm-4861
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IB90
"Best" AlphaFill ligand hit: HEM (heme, Local RMSD=0.21) with 7OW9 (Global RMSD=17.89)
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 2 | 7 | 8 | 22 |
| disruptive | 13 | 41 | 21 | 57 |
| missense | 13 | 41 | 20 | 53 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 3 | 19 | 17 | 19 |
| disruptive | 19 | 85 | 35 | 80 |
| missense | 17 | 78 | 32 | 63 |
PlasmoDB Total SNPs: 26
Non-coding: 1 | Synonymous: 6 | Nonsynonymous: 19 | Stop Codon: 0
Protein Length: 305 | Molecular Weight (kDa): 36.067
UniProt ID(s): Q8IB90
PDB ID(s): None
Isoelectric Point: 5.85
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | N/A | N/A |
| PFam | N/A | N/A |
| Superfamily | SSF50729 | N/A |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 30545367 | Identification of a PH domain-containing protein which is localized tocrystalloid bodies of Plasmodium ookinetes. | Jenwithisuk R, Kangwanrangsan N, ..., Ishino T | 10.1186/s12936-018-2617-6 |