About Gene List

PF3D7_1005300

Genome location: Pf3D7_10_v3:233,285..234,473(-)

Genome classification: Core

Function and Localization

Product Description: conserved Plasmodium protein, unknown function

SignalP Peptide: N/A

# Transmembrane Domains: 1

EC Numbers: None

Curated GO (PlasmoDB): None

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.00 1.00
Trophozoite not expressed 0.02 0.99
Schizont not expressed 0.02 0.99
Gametocyte not expressed 0.12 0.92

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1005300

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 0.831 | MFS: -2.329 | #Insertions: 2

PlasmoGEM Phenotype: N/A

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8IJY6

"Best" AlphaFill ligand hit: UDP (uridine-5'-diphosphate, Local RMSD=0.06) with 2BVL (Global RMSD=10.82)

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_533560

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 8 12 12 26
disruptive 9 36 20 67
missense 7 35 20 63

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 9 27 18 20
disruptive 15 80 44 91
missense 12 74 42 72

PlasmoDB Total SNPs: 50

Non-coding: 9 | Synonymous: 23 | Nonsynonymous: 18 | Stop Codon: 0

Protein Information

Protein Length: 343 | Molecular Weight (kDa): 41.356

UniProt ID(s): Q8IJY6

PDB ID(s): None

Isoelectric Point: 9.88

Protein Domain Annotations:

Source Family ID Description
InterPro N/A N/A
PFam N/A N/A
Superfamily N/A N/A

Associated Publications

PMID Title Authors DOI/Link
12368864 Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, Hall N, ..., Barrell B 10.1038/nature01097