About Gene List

PF3D7_1013200

Genome location: Pf3D7_10_v3:509,224..515,598(+)

Genome classification: Core

Function and Localization

Product Description: conserved Plasmodium protein, unknown function

SignalP Peptide: N/A

# Transmembrane Domains: 0

EC Numbers: None

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0005634 nucleus

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite expressed N/A N/A
Ring expressed 0.16 0.92
Trophozoite expressed 0.58 0.67
Schizont expressed 1.41 0.36
Gametocyte expressed 0.52 0.70

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1013200

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 1 | MFS: -0.251 | #Insertions: 12

PlasmoGEM Phenotype: Slow (Pb ortholog: PBANKA_1211600)

  • Relative Growth Rate: 0.70 ± 0.19
  • Confidence: 4.72

RMgmDB ABS Phenotype: Different from wild type (Pb ortholog: PBANKA_1211600)

Modification: Disrupted | RMgm-3226

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8IJR3

"Best" AlphaFill ligand hit: No AlphaFill hits

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_532652

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 13 44 28 61
disruptive 43 159 86 194
missense 24 133 78 152

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 19 91 52 62
disruptive 76 357 120 303
missense 44 278 97 191

PlasmoDB Total SNPs: 284

Non-coding: 183 | Synonymous: 51 | Nonsynonymous: 50 | Stop Codon: 0

Protein Information

Protein Length: 1064 | Molecular Weight (kDa): 123.74

UniProt ID(s): Q8IJR3

PDB ID(s): None

Isoelectric Point: 9.39

Protein Domain Annotations:

Source Family ID Description
InterPro N/A N/A
PFam N/A N/A
Superfamily N/A N/A

Associated Publications

PMID Title Authors DOI/Link
12368864 Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, Hall N, ..., Barrell B 10.1038/nature01097
23181666 Organellar proteomics reveals hundreds of novel nuclear proteins in the malariaparasite Plasmodium falciparum. Oehring SC, Woodcroft BJ, ..., Voss TS 10.1186/gb-2012-13-11-r108