Genome location: Pf3D7_10_v3:1,409,095..1,410,806(+)
Genome classification: Core
Product Description: merozoite surface protein
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB): None
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | possibly expressed | N/A | N/A |
| Ring | possibly expressed | 0.02 | 0.99 |
| Trophozoite | possibly expressed | 0.03 | 0.98 |
| Schizont | expressed | 0.58 | 0.66 |
| Gametocyte | not expressed | 0.01 | 0.99 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1035600
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 0.999 | MFS: -2.559 | #Insertions: 1
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IJ53
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 4 | 11 | 9 | 9 |
| disruptive | 16 | 41 | 28 | 59 |
| missense | 13 | 35 | 25 | 51 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 9 | 14 | 8 | 15 |
| disruptive | 29 | 82 | 32 | 70 |
| missense | 23 | 67 | 27 | 58 |
PlasmoDB Total SNPs: 77
Non-coding: 45 | Synonymous: 9 | Nonsynonymous: 21 | Stop Codon: 2
Protein Length: 424 | Molecular Weight (kDa): 48.196
UniProt ID(s): C5HEG4, C5HEG5, C5HEG7, C5HEG8, C5HEG9, C5HEH0, C5HEH1, C5HEH3, C5HEH4, C5HEH8, Q8IJ53
PDB ID(s): None
Isoelectric Point: 4.36
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR010784 | Merozoite surface protein-type |
| PFam | PF07133 | Merozoite surface protein-type |
| Superfamily | N/A | N/A |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |