Product Description: conserved Plasmodium protein, unknown function
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB): None
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | possibly expressed | N/A | N/A |
Ring | expressed | 2.15 | 0.25 |
Trophozoite | expressed | 1.75 | 0.25 |
Schizont | expressed | 1.45 | 0.35 |
Gametocyte | expressed | 1.30 | 0.40 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1123000
Resistome Missense Mutations: D580N
Resistome Compounds with Missense Mutations: BCH070
Resistome # Samples with Disruptive Mutations: 5 (2 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 0.991 | MFS: -2.752 | #Insertions: 1
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IID3
"Best" AlphaFill ligand hit: DTP (, Local RMSD=4.21) with 5OLK (Global RMSD=29.20)
No associated EC numbersOrthology to BindingDB Entries:
UniProt | Protein Name | Species | Homology Source | BindingDB Ligands |
---|---|---|---|---|
O75376 | Nuclear receptor corepressor 1 | Homo sapiens | OrthoDB | VorinostatCHEMBL4065412CHEMBL4170617Vorinostat... |
Q9Y618 | Histone deacetylase 3/Nuclear receptor corepressor 2 [395-489] | OrthoDB | MLS000073507MLS000075822MLS000038796MLS000077721... |
Protein Length: 2467 | Molecular Weight (kDa): 292.909
PDB ID(s): None
Isoelectric Point: 9.74
Protein Domain Annotations:
Source | Family ID | Description |
---|---|---|
InterPro | IPR001005 | SANT/Myb domain |
InterPro | IPR009057 | Homeobox-like domain superfamily |
PFam | N/A | N/A |
Superfamily | SSF46689 | Homeobox-like domain superfamily |
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 41 | 85 | 62 | 120 |
disruptive | 104 | 362 | 179 | 407 |
missense | 62 | 250 | 139 | 289 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 57 | 186 | 88 | 143 |
disruptive | 226 | 738 | 319 | 716 |
missense | 117 | 496 | 232 | 435 |
PlasmoDB Total SNPs: 522
Non-coding: 185 | Synonymous: 216 | Nonsynonymous: 121 | Stop Codon: 0
PMID | Title | Authors | DOI/Link |
---|---|---|---|
12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |
16267556 | A protein interaction network of the malaria parasite Plasmodium falciparum. | LaCount DJ, Vignali M, ..., Hughes RE | 10.1038/nature04104 |