Product Description: CRAL/TRIO domain-containing protein, putative
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0005634 | nucleus |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.26 | 0.88 |
| Trophozoite | possibly expressed | 0.44 | 0.74 |
| Schizont | possibly expressed | 0.79 | 0.63 |
| Gametocyte | expressed | 0.85 | 0.56 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1127600
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.178 | MFS: -3.244 | #Insertions: 0
PlasmoGEM Phenotype: Essential (Pb ortholog: PBANKA_1125200)
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8II87
"Best" AlphaFill ligand hit: 6PL ((4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide, Local RMSD=8.17) with 3B7Q (Global RMSD=6.38)
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 2 | 10 | 11 | 18 |
| disruptive | 2 | 13 | 3 | 16 |
| missense | 2 | 5 | 1 | 12 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 3 | 24 | 22 | 23 |
| disruptive | 5 | 32 | 19 | 79 |
| missense | 4 | 12 | 17 | 47 |
PlasmoDB Total SNPs: 144
Non-coding: 139 | Synonymous: 4 | Nonsynonymous: 1 | Stop Codon: 0
Protein Length: 297 | Molecular Weight (kDa): 34.967
UniProt ID(s): Q8II87
PDB ID(s): None
Isoelectric Point: 8.2
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR001251 | CRAL-TRIO lipid binding domain |
| InterPro | IPR036273 | CRAL/TRIO, N-terminal domain superfamily |
| InterPro | IPR036865 | CRAL-TRIO lipid binding domain superfamily |
| PFam | PF00650 | CRAL-TRIO lipid binding domain |
| Superfamily | SSF46938 | CRAL/TRIO, N-terminal domain superfamily |
| Superfamily | SSF52087 | CRAL-TRIO lipid binding domain superfamily |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |
| 23181666 | Organellar proteomics reveals hundreds of novel nuclear proteins in the malariaparasite Plasmodium falciparum. | Oehring SC, Woodcroft BJ, ..., Voss TS | 10.1186/gb-2012-13-11-r108 |