Product Description: amino acid transporter, putative
SignalP Peptide: N/A
# Transmembrane Domains: 15
EC Numbers: None
Curated GO (PlasmoDB):
Type | GO Term | Name |
---|---|---|
Component | GO:0005886 | plasma membrane |
Process | GO:0035725 | sodium ion transmembrane transport |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | not expressed | N/A | N/A |
Ring | not expressed | 0.01 | 0.99 |
Trophozoite | not expressed | 0.03 | 0.98 |
Schizont | possibly expressed | 0.06 | 0.96 |
Gametocyte | possibly expressed | 0.13 | 0.93 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1132500
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 1 | MFS: -0.049 | #Insertions: 7
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: Not different from wild type (Pb ortholog: PY17X_0917400)
Modification: Disrupted | RMgm-4771
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8II40
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 18 | 81 | 38 | 85 |
disruptive | 58 | 192 | 107 | 228 |
missense | 49 | 180 | 99 | 204 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 28 | 136 | 78 | 95 |
disruptive | 104 | 420 | 161 | 380 |
missense | 72 | 363 | 135 | 264 |
PlasmoDB Total SNPs: 115
Non-coding: 0 | Synonymous: 63 | Nonsynonymous: 52 | Stop Codon: 0
Protein Length: 1439 | Molecular Weight (kDa): 174.052
UniProt ID(s): Q8II40
PDB ID(s): None
Isoelectric Point: 9.64
Protein Domain Annotations:
Source | Family ID | Description |
---|---|---|
InterPro | IPR000175 | Sodium:neurotransmitter symporter |
InterPro | IPR037272 | Sodium:neurotransmitter symporter superfamily |
PFam | PF00209 | Sodium:neurotransmitter symporter |
Superfamily | SSF161070 | Sodium:neurotransmitter symporter superfamily |
PMID | Title | Authors | DOI/Link |
---|---|---|---|
11152613 | Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. | Krogh A, Larsson B, von Heijne G, Sonnhammer EL | 10.1006/jmbi.2000.4315 |
12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |