Genome location: Pf3D7_11_v3:1,807,031..1,810,365(+)
Genome classification: Core
Product Description: ABC transporter B family member 3, putative
SignalP Peptide: MRNYGLLHFLLVLLLLNLSIKS
# Transmembrane Domains: 6
EC Numbers: None
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0020011 | apicoplast |
| Component | GO:0016021 | integral component of membrane |
| Component | GO:0005739 | mitochondrion |
| Function | GO:0005524 | ATP binding |
| Function | GO:0042626 | ATPase-coupled transmembrane transporter activity |
| Process | GO:0055085 | transmembrane transport |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.08 | 0.96 |
| Trophozoite | expressed | 0.44 | 0.74 |
| Schizont | not expressed | 0.08 | 0.95 |
| Gametocyte | not expressed | 0.38 | 0.78 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1145500
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 1 | MFS: -0.269 | #Insertions: 3
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: Not different from wild type (Pb ortholog: PY17X_0904900)
Modification: Disrupted | RMgm-4775
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IHR3
"Best" AlphaFill ligand hit: ANP (phosphoaminophosphonic acid-adenylate ester, Local RMSD=0.08) with 5D3M (Global RMSD=5.19)
No associated EC numbersOrthology to BindingDB Entries:
| UniProt | Protein Name | Species | Homology Source | BindingDB Ligands |
|---|---|---|---|---|
| P06795 | ATP-dependent translocase ABCB1 | Mus musculus | OrthoDB | CHEMBL346486CHEMBL152651CHEMBL152590CHEMBL433715... |
| P08183 | ATP-dependent translocase ABCB1 | OrthoDB | US11802108, Compound CSAUS9090657, DEBIO-025, 2N-(4-Bromo-phenyl)-2,4,5-trimethoxy-benzamide (10)2,4,5-Trimethoxy-N-(2-methoxy-phenyl)-benzamide (14)... | |
| P21439 | Phosphatidylcholine translocator ABCB4 | OrthoDB | BMS-986020 | |
| O95342 | Bile salt export pump | OrthoDB | US11802108, Compound CSAUS9090657, DEBIO-025, 2CHEMBL1651956CHEMBL3344501... | |
| P21447 | ATP-dependent translocase ABCB1 | OrthoDB | VinblastineCHEMBL283438CHEMBL27536CHEMBL29631... | |
| O70127 | Bile salt export pump | Rattus norvegicus | OrthoDB | AtorvastatinRIFAMYCINCyclosporine APioglitazone... |
Protein Length: 833 | Molecular Weight (kDa): 99.349
UniProt ID(s): A0A060CT48, A0A060CT89, A0A060CW66, A0A060CWQ3, A0A060CWQ8, A0A060CWR5, A0A060CX13, A0A060D1W9, A0A060D223, A0A5J6C3S0, A0A5J6C3Y3, A0A5J6C4P9, A0A5J6C4T2, A0A5J6C509, A0A5J6C6A9, A0A5J6C7Y6, I6Q0Z2, I6Q2L1, I6Q5H4, Q8IHR3
PDB ID(s): None
Isoelectric Point: 10.25
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR003439 | ABC transporter-like |
| InterPro | IPR003593 | AAA+ ATPase domain |
| InterPro | IPR011527 | ABC transporter type 1, transmembrane domain |
| InterPro | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| InterPro | IPR036640 | ABC transporter type 1, transmembrane domain superfamily |
| InterPro | IPR039421 | Type I protein exporter |
| PFam | PF00005 | ABC transporter-like |
| PFam | PF00664 | ABC transporter type 1, transmembrane domain |
| Superfamily | SSF52540 | P-loop containing nucleoside triphosphate hydrolase |
| Superfamily | SSF90123 | ABC transporter type 1, transmembrane domain superfamily |
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 8 | 64 | 30 | 61 |
| disruptive | 22 | 99 | 45 | 143 |
| missense | 20 | 96 | 44 | 128 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 21 | 106 | 47 | 60 |
| disruptive | 38 | 212 | 109 | 249 |
| missense | 31 | 189 | 90 | 171 |
PlasmoDB Total SNPs: 151
Non-coding: 97 | Synonymous: 27 | Nonsynonymous: 27 | Stop Codon: 0
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 11152613 | Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. | Krogh A, Larsson B, von Heijne G, Sonnhammer EL | 10.1006/jmbi.2000.4315 |
| 12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |
| 28902970 | A genetic screen in rodent malaria parasites identifies five new apicoplastputative membrane transporters, one of which is essential in human malariaparasites | Sayers CP, Mollard V, ..., Goodman CD | 10.1111/cmi.12789 |
| 30212465 | Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. | Boucher MJ, Ghosh S, ..., Yeh E | 10.1371/journal.pbio.2005895 |