About Gene List

PF3D7_1306200

Genome location: Pf3D7_13_v3:288,740..291,710(-)

Genome classification: Core

Function and Localization

Product Description: conserved protein, unknown function

SignalP Peptide: MKLSLVIFCIVIIFFKENIS

# Transmembrane Domains: 0

EC Numbers: None

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0020011 apicoplast

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.03 0.99
Trophozoite expressed 0.36 0.77
Schizont expressed 0.14 0.90
Gametocyte expressed 0.12 0.93

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1306200

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Non - Mutable in CDS

MIS: 0.148 | MFS: -3.248 | #Insertions: 0

PlasmoGEM Phenotype: Essential (Pb ortholog: PBANKA_1404700)

  • Relative Growth Rate: 0.17 ± 0.11
  • Confidence: 5.75

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8IEQ3

"Best" AlphaFill ligand hit: TBR (dodecabromohexatantalum, Local RMSD=0.09) with 2BVL (Global RMSD=14.57)

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_146118

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 5 26 11 25
disruptive 10 40 26 73
missense 10 40 26 66

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 9 42 21 48
disruptive 16 108 50 102
missense 14 94 38 78

PlasmoDB Total SNPs: 112

Non-coding: 82 | Synonymous: 19 | Nonsynonymous: 10 | Stop Codon: 1

Protein Information

Protein Length: 478 | Molecular Weight (kDa): 56.811

UniProt ID(s): Q8IEQ3

PDB ID(s): None

Isoelectric Point: 9.99

Protein Domain Annotations:

Source Family ID Description
InterPro IPR029058 Alpha/Beta hydrolase fold
PFam N/A N/A
Superfamily SSF53474 Alpha/Beta hydrolase fold

Associated Publications

PMID Title Authors DOI/Link
30212465 Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. Boucher MJ, Ghosh S, ..., Yeh E 10.1371/journal.pbio.2005895