About Gene List

PF3D7_1316100 (IPK2)

Genome location: Pf3D7_13_v3:673,163..678,530(+)

Genome classification: Core

Function and Localization

Product Description: inositol polyphosphate kinase, putative

SignalP Peptide: N/A

# Transmembrane Domains: 0

EC Numbers: 2.7.-.- (Transferring phosphorus-containing groups.);2.7.1.151 (Inositol-polyphosphate multikinase)

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0005737 cytoplasm
Component GO:0005634 nucleus
Function GO:0000828 inositol hexakisphosphate kinase activity
Function GO:0016301 kinase activity
Process GO:0032958 inositol phosphate biosynthetic process
Process GO:0046854 phosphatidylinositol phosphate biosynthetic process

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.49 0.77
Trophozoite not expressed 1.07 0.48
Schizont not expressed 0.81 0.59
Gametocyte possibly expressed 1.15 0.43

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1316100

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Mutable in CDS

MIS: 1 | MFS: -2.492 | #Insertions: 4

PlasmoGEM Phenotype: Dispensable (Pb ortholog: PBANKA_1414600)

  • Relative Growth Rate: 0.99 ± 0.09
  • Confidence: 6.19

RMgmDB ABS Phenotype: Different from wild type (Pb ortholog: PBANKA_1414600)

Modification: Disrupted | RMgm-3811

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: Q8IEF3

"Best" AlphaFill ligand hit: QUE (quercetin, Local RMSD=0.38) with 6M89 (Global RMSD=2.10)

BRENDA EC Inhibitors:

EC # Name EC Inhibitors
2.7.-.- Ex: hamamelose kinase ATPADPCoAUDPAMPGDPKClUMPCDPCTPGTPUTP...
2.7.1.151 inositol-polyphosphate multikinase gossypolWortmanninRose bengalellagic acidabscisic acidchlorogenic acidaurintricarboxylic acidinositol(1,3,4)-trisphosphateinositol(3,5,6)-trisphosphate

Orthology to BindingDB Entries:

UniProt Protein Name Species Homology Source BindingDB Ligands
Q96PC2 Inositol hexakisphosphate kinase 3 OrthoDB, OrthoMCL BLAST CHEMBL4555782CHEMBL1368139US9903855, Molecule 1CHEMBL5201056...
Q9UHH9 Inositol hexakisphosphate kinase 2 OrthoDB CHEMBL243677Myricetin (Myr)Kaempferol (Kmp)acs.jmedchem.1c00409_ST.789...
Q92551 Inositol hexakisphosphate kinase 1 OrthoDB CHEMBL4459958CHEMBL4563130CHEMBL4555782CHEMBL4555782...

Orthology Information

Ortholog Group (OrthoMCL): OG6_101518

Most Similar Human Ortholog: A0A0U1RRE0

TM-align score: 0.69 | RMSD: 1.58

Seq Identity: 0.34 | Length: 61 / 1601

All Human Orthologs (OrthoMCL):

Gene ID Description
ENSG00000068745 inositol hexakisphosphate kinase 2
ENSG00000161896 inositol hexakisphosphate kinase 3
ENSG00000176095 inositol hexakisphosphate kinase 1

Protein Information

Protein Length: 1601 | Molecular Weight (kDa): 192.246

UniProt ID(s): Q8IEF3

PDB ID(s): None

Isoelectric Point: 9.62

Protein Domain Annotations:

Source Family ID Description
InterPro IPR005522 Inositol polyphosphate kinase
PFam PF03770 Inositol polyphosphate kinase
Superfamily SSF56104 N/A

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 12 99 59 103
disruptive 55 232 123 294
missense 38 208 106 259

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 29 202 74 99
disruptive 107 495 226 455
missense 68 421 193 344

PlasmoDB Total SNPs: 219

Non-coding: 51 | Synonymous: 81 | Nonsynonymous: 84 | Stop Codon: 3

Associated Publications

PMID Title Authors DOI/Link
33282871 Sphingolipids and Inositol Phosphates Regulate the Tau Protein PhosphorylationStatus in Humanized Yeast Randez-Gil F, Bojunga L, ..., Prieto JA 10.3389/fcell.2020.592159
18694931 Regulation of telomere length by fatty acid elongase 3 in yeast. Involvement ofinositol phosphate metabolism and Ku70/80 function Ponnusamy S, Alderson NL, ..., Ogretmen B 10.1074/jbc.M802980200
21538248 Transcriptional control of genes involved in yeast phospholipid biosynthesis Wimalarathna R, Tsai CH, Shen CH 10.1007/s12275-011-1130-1
22889849 KCS1 deletion in Saccharomyces cerevisiae leads to a defect in translocation ofautophagic proteins and reduces autophagosome formation Taylor R Jr, Chen PH, ..., Jin SV 10.4161/auto.20681