About Gene List

PF3D7_1349900

Genome location: Pf3D7_13_v3:2,002,379..2,002,989(-)

Genome classification: Core

Function and Localization

Product Description: conserved Plasmodium protein, unknown function

SignalP Peptide: N/A

# Transmembrane Domains: 1

EC Numbers: None

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0020011 apicoplast

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite possibly expressed N/A N/A
Ring not expressed 0.01 0.99
Trophozoite not expressed 0.12 0.92
Schizont not expressed 0.02 0.99
Gametocyte not expressed 0.18 0.88

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1349900

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Non - Mutable in CDS

MIS: 0.924 | MFS: -2.171 | #Insertions: 0

PlasmoGEM Phenotype: Essential (Pb ortholog: PBANKA_1362700)

  • Relative Growth Rate: 0.13 ± 0.05
  • Confidence: 7.39

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: A0A5K1K985

"Best" AlphaFill ligand hit: No AlphaFill hits

No associated EC numbers

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_532596

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 2 14 7 14
disruptive 4 25 13 35
missense 3 18 11 33

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 4 26 10 10
disruptive 7 53 27 42
missense 4 38 22 31

PlasmoDB Total SNPs: 32

Non-coding: 12 | Synonymous: 15 | Nonsynonymous: 5 | Stop Codon: 0

Protein Information

Protein Length: 186 | Molecular Weight (kDa): 22.402

UniProt ID(s): A0A5K1K985

PDB ID(s): None

Isoelectric Point: 9.64

Protein Domain Annotations:

Source Family ID Description
InterPro N/A N/A
PFam N/A N/A
Superfamily N/A N/A

Associated Publications

PMID Title Authors DOI/Link
30212465 Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. Boucher MJ, Ghosh S, ..., Yeh E 10.1371/journal.pbio.2005895