About Gene List

PF3D7_1351200

Genome location: Pf3D7_13_v3:2,042,430..2,048,269(+)

Genome classification: Core

Function and Localization

Product Description: conserved Plasmodium protein, unknown function

SignalP Peptide: MNLLVICIYYLFFLNIEKNISC

# Transmembrane Domains: 1

EC Numbers: 3.2.1.23 (Beta-galactosidase)

Curated GO (PlasmoDB):

Type GO Term Name
Component GO:0020011 apicoplast

Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):

Stage LR class MCA mean MCA prop. zeros
Sporozoite not expressed N/A N/A
Ring not expressed 0.18 0.91
Trophozoite expressed 0.73 0.60
Schizont possibly expressed 0.18 0.89
Gametocyte not expressed 0.46 0.75

More info:

Resistome Mutations

Old (Pf3D7v3) Gene ID: PF3D7_1351200

Resistome Missense Mutations: None

Resistome Compounds with Missense Mutations: None

Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)

Essentiality (ABS)

Zhang Phenotype: Non - Mutable in CDS

MIS: 0.122 | MFS: -3.079 | #Insertions: 0

PlasmoGEM Phenotype: N/A

RMgmDB ABS Phenotype: N/A

More info: PhenoPlasm Link

Binding Evidence

AlphaFill Uniprot ID: A0A5K1K9F9

"Best" AlphaFill ligand hit: No AlphaFill hits

BRENDA EC Inhibitors:

EC # Name EC Inhibitors
3.2.1.23 beta-galactosidase BRENDA SOAP query unsuccessful

No evidence of orthology to BindingDB entries

Orthology Information

Ortholog Group (OrthoMCL): OG6_532723

No human ortholog(s)

Genetic Variation

MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:

Homozygous genotype calls only

variant type common rare doubleton singleton
synonymous 30 85 56 100
disruptive 96 237 118 279
missense 47 176 102 227

Any inclusion in genotype call

variant type common rare doubleton singleton
synonymous 44 163 72 117
disruptive 168 461 217 427
missense 83 338 176 266

PlasmoDB Total SNPs: 259

Non-coding: 108 | Synonymous: 80 | Nonsynonymous: 71 | Stop Codon: 0

Protein Information

Protein Length: 1550 | Molecular Weight (kDa): 186.322

UniProt ID(s): A0A5K1K9F9

PDB ID(s): None

Isoelectric Point: 9.57

Protein Domain Annotations:

Source Family ID Description
InterPro IPR001944 Glycoside hydrolase, family 35
InterPro IPR017853 Glycoside hydrolase superfamily
InterPro IPR031330 Glycoside hydrolase 35, catalytic domain
PFam PF01301 Glycoside hydrolase 35, catalytic domain
Superfamily SSF51445 Glycoside hydrolase superfamily

Associated Publications

PMID Title Authors DOI/Link
30212465 Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. Boucher MJ, Ghosh S, ..., Yeh E 10.1371/journal.pbio.2005895