Product Description: conserved Plasmodium protein, unknown function
SignalP Peptide: MNLLVICIYYLFFLNIEKNISC
# Transmembrane Domains: 1
EC Numbers: 3.2.1.23 (Beta-galactosidase)
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0020011 | apicoplast |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.18 | 0.91 |
| Trophozoite | expressed | 0.73 | 0.60 |
| Schizont | possibly expressed | 0.18 | 0.89 |
| Gametocyte | not expressed | 0.46 | 0.75 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1351200
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.122 | MFS: -3.079 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: A0A5K1K9F9
"Best" AlphaFill ligand hit: No AlphaFill hits
BRENDA EC Inhibitors:
| EC # | Name | EC Inhibitors |
|---|---|---|
| 3.2.1.23 | beta-galactosidase | BRENDA SOAP query unsuccessful |
No evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 30 | 85 | 56 | 100 |
| disruptive | 96 | 237 | 118 | 279 |
| missense | 47 | 176 | 102 | 227 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 44 | 163 | 72 | 117 |
| disruptive | 168 | 461 | 217 | 427 |
| missense | 83 | 338 | 176 | 266 |
PlasmoDB Total SNPs: 259
Non-coding: 108 | Synonymous: 80 | Nonsynonymous: 71 | Stop Codon: 0
Protein Length: 1550 | Molecular Weight (kDa): 186.322
UniProt ID(s): A0A5K1K9F9
PDB ID(s): None
Isoelectric Point: 9.57
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | IPR001944 | Glycoside hydrolase, family 35 |
| InterPro | IPR017853 | Glycoside hydrolase superfamily |
| InterPro | IPR031330 | Glycoside hydrolase 35, catalytic domain |
| PFam | PF01301 | Glycoside hydrolase 35, catalytic domain |
| Superfamily | SSF51445 | Glycoside hydrolase superfamily |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 30212465 | Integrative proteomics and bioinformatic prediction enable a high-confidenceapicoplast proteome in malaria parasites. | Boucher MJ, Ghosh S, ..., Yeh E | 10.1371/journal.pbio.2005895 |