Product Description: conserved Plasmodium protein, unknown function
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB): None
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | not expressed | N/A | N/A |
Ring | not expressed | 0.03 | 0.98 |
Trophozoite | not expressed | 0.23 | 0.86 |
Schizont | not expressed | 0.02 | 0.99 |
Gametocyte | not expressed | 0.12 | 0.93 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1456200
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.167 | MFS: -2.717 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IKR7
"Best" AlphaFill ligand hit: AMP (adenosine monophosphate, Local RMSD=4.08) with 6JWQ (Global RMSD=15.15)
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 5 | 55 | 29 | 57 |
disruptive | 13 | 81 | 63 | 117 |
missense | 10 | 79 | 60 | 106 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 13 | 104 | 40 | 70 |
disruptive | 27 | 192 | 92 | 251 |
missense | 21 | 166 | 77 | 179 |
PlasmoDB Total SNPs: 153
Non-coding: 50 | Synonymous: 59 | Nonsynonymous: 42 | Stop Codon: 2
PMID | Title | Authors | DOI/Link |
---|---|---|---|
12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |