Genome location: Pf3D7_14_v3:2,803,593..2,804,613(+)
Genome classification: Core
Product Description: leucine-rich repeat protein
SignalP Peptide: N/A
# Transmembrane Domains: 0
EC Numbers: None
Curated GO (PlasmoDB):
Type | GO Term | Name |
---|---|---|
Function | GO:0008171 | O-methyltransferase activity |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
Stage | LR class | MCA mean | MCA prop. zeros |
---|---|---|---|
Sporozoite | not expressed | N/A | N/A |
Ring | not expressed | 0.01 | 1.00 |
Trophozoite | not expressed | 0.01 | 1.00 |
Schizont | not expressed | 0.02 | 0.98 |
Gametocyte | not expressed | 0.11 | 0.93 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1468300
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Non - Mutable in CDS
MIS: 0.272 | MFS: -3.425 | #Insertions: 0
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: Q8IKF4
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
Ortholog Group (OrthoMCL): OG6_106382
Most Similar Human Ortholog: Q96E66
TM-align score: 0.71 | RMSD: 2.86
Seq Identity: 0.24 | Length: 155 / 249
All Human Orthologs (OrthoMCL):
Gene ID | Description |
---|---|
ENSG00000184154 | leucine rich transmembrane and O-methyltransferase domain containing |
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 4 | 9 | 7 | 19 |
disruptive | 3 | 21 | 16 | 45 |
missense | 3 | 21 | 16 | 43 |
Any inclusion in genotype call
variant type | common | rare | doubleton | singleton |
---|---|---|---|---|
synonymous | 4 | 25 | 10 | 26 |
disruptive | 4 | 58 | 33 | 71 |
missense | 4 | 51 | 26 | 56 |
PlasmoDB Total SNPs: 37
Non-coding: 26 | Synonymous: 5 | Nonsynonymous: 5 | Stop Codon: 1
PMID | Title | Authors | DOI/Link |
---|---|---|---|
12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |