Product Description: conserved Plasmodium membrane protein, unknown function
SignalP Peptide: N/A
# Transmembrane Domains: 22
EC Numbers: None
Curated GO (PlasmoDB):
| Type | GO Term | Name |
|---|---|---|
| Component | GO:0016020 | membrane |
Expression by stage (LR - Le Roch et al., and MCA - Malaria Cell Atlas):
| Stage | LR class | MCA mean | MCA prop. zeros |
|---|---|---|---|
| Sporozoite | not expressed | N/A | N/A |
| Ring | not expressed | 0.05 | 0.97 |
| Trophozoite | not expressed | 0.20 | 0.88 |
| Schizont | not expressed | 0.10 | 0.94 |
| Gametocyte | not expressed | 1.25 | 0.41 |
More info:
Old (Pf3D7v3) Gene ID: PF3D7_1474200
Resistome Missense Mutations: None
Resistome Compounds with Missense Mutations: None
Resistome # Samples with Disruptive Mutations: 0 (0 missense, 0 "interesting" missense)
Zhang Phenotype: Mutable in CDS
MIS: 1 | MFS: -1.28 | #Insertions: 21
PlasmoGEM Phenotype: N/A
RMgmDB ABS Phenotype: N/A
More info: PhenoPlasm Link
AlphaFill Uniprot ID: N/A
"Best" AlphaFill ligand hit: No AlphaFill hits
No associated EC numbersNo evidence of orthology to BindingDB entries
MalariaGEN Pf7 (worldwide samples) # unique SNV/indels:
Homozygous genotype calls only
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 50 | 281 | 172 | 348 |
| disruptive | 237 | 876 | 481 | 1023 |
| missense | 141 | 749 | 428 | 852 |
Any inclusion in genotype call
| variant type | common | rare | doubleton | singleton |
|---|---|---|---|---|
| synonymous | 92 | 559 | 230 | 372 |
| disruptive | 460 | 1782 | 750 | 1443 |
| missense | 269 | 1441 | 621 | 987 |
PlasmoDB Total SNPs: 517
Non-coding: 46 | Synonymous: 254 | Nonsynonymous: 217 | Stop Codon: 0
Protein Length: 4765 | Molecular Weight (kDa): 578.025
UniProt ID(s): Q8IK96
PDB ID(s): None
Isoelectric Point: 9
Protein Domain Annotations:
| Source | Family ID | Description |
|---|---|---|
| InterPro | N/A | N/A |
| PFam | N/A | N/A |
| Superfamily | N/A | N/A |
| PMID | Title | Authors | DOI/Link |
|---|---|---|---|
| 11152613 | Predicting transmembrane protein topology with a hidden Markov model: applicationto complete genomes. | Krogh A, Larsson B, von Heijne G, Sonnhammer EL | 10.1006/jmbi.2000.4315 |
| 12368864 | Genome sequence of the human malaria parasite Plasmodium falciparum. | Gardner MJ, Hall N, ..., Barrell B | 10.1038/nature01097 |